Peptide-based inhibitors of the hepatitis C virus serine protease

Bioorg Med Chem Lett. 1998 Jul 7;8(13):1713-8. doi: 10.1016/s0960-894x(98)00299-6.

Abstract

Hexapeptide DDIVPC-OH is a competitive inhibitor of the hepatitis C virus (HCV) NS3 protease complexed with NS4A cofactor peptide. This hexapeptide corresponds to the N-terminal cleavage product of an HCV dodecapeptide substrate derived from the NS5A/5B cleavage site. Structure-activity studies on Ac-DDIVPC-OH revealed that side chains of the P4, P3 and P1 residues contribute the most to binding and that the introduction of a D-amino acid at the P5 position improves potency considerably. Furthermore, there is a strong preference for cysteine at the P1 position and conservative replacements, such as serine, are not well tolerated.

MeSH terms

  • Amino Acid Sequence
  • Hepacivirus / enzymology*
  • Molecular Sequence Data
  • Oligopeptides / chemistry
  • Oligopeptides / pharmacology*
  • Serine Endopeptidases / metabolism*
  • Serine Proteinase Inhibitors / chemistry
  • Serine Proteinase Inhibitors / pharmacology*
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Oligopeptides
  • Serine Proteinase Inhibitors
  • Serine Endopeptidases